Advances in Computational BiologyH.O. Villar The second volume in a series which aims to focus on advances in computational biology. This volume discusses such topics as: statistical analysis of protein sequences; progress in large-scale sequence analysis; and the architecture of loops in proteins. |
Contents
15 | |
65 | |
CHAPTER 4 STATISTICAL ANALYSIS OF PROTEIN SEQUENCES | 121 |
161 | |
209 | |
CHAPTER 7 THE ARCHITECTURE OF LOOPS IN PROTEINS | 239 |
261 | |
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Common terms and phrases
Acids Res algorithms alignment Altschul amino acid amino acid sequence approach Biol biological BLASTP Brendel Cachau calculated cell Chem Claverie coding measures codon composition computational conformation defensins determined dimer distribution DNA sequence domain enzyme example exons experimental Figure free energy frequencies FRMD function GenBank gene identification genome genomic sequence Grail gramicidin Heijne Henikoff high-scoring segments homology homology modeling HSSPs human hydrophobic identified immunoglobulin integral membrane proteins Karlin lattice length lipid bilayer lipid-protein interactions loop marg matching matrix MD trajectory membrane proteins methods mismatch mixture molecular dynamics molecule monomers motif Mouritsen nucleotides parameters patterns phase transition polypeptide pos pos pos position prediction probability problem protein sequences query random regions residues restraints segment pairs Selsted sequence analysis side chain signal peptide similar simulation specific Sperotto splice substitution scores Swiss-Prot taxol technique temperature template thermodynamic transmembrane XBLAST
Popular passages
Page 258 - Kraulis, PJ (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures.
Page 13 - J 16: 4261-4266. von Heijne, G. (1986) The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans-membrane topology. EMBO J 5: 3021-3027.