Understanding Molecular Simulation: From Algorithms to Applications
Understanding Molecular Simulation: From Algorithms to Applications explains the physics behind the "recipes" of molecular simulation for materials science. Computer simulators are continuously confronted with questions concerning the choice of a particular technique for a given application. A wide variety of tools exist, so the choice of technique requires a good understanding of the basic principles. More importantly, such understanding may greatly improve the efficiency of a simulation program. The implementation of simulation methods is illustrated in pseudocodes and their practical use in the case studies used in the text.
Since the first edition only five years ago, the simulation world has changed significantly -- current techniques have matured and new ones have appeared. This new edition deals with these new developments; in particular, there are sections on:
· Transition path sampling and diffusive barrier crossing to simulaterare events
· Dissipative particle dynamic as a course-grained simulation technique
· Novel schemes to compute the long-ranged forces
· Hamiltonian and non-Hamiltonian dynamics in the context constant-temperature and constant-pressure molecular dynamics simulations
· Multiple-time step algorithms as an alternative for constraints
· Defects in solids
· The pruned-enriched Rosenbluth sampling, recoil-growth, and concerted rotations for complex molecules
· Parallel tempering for glassy Hamiltonians
Examples are included that highlight current applications and the codes of case studies are available on the World Wide Web. Several new examples have been added since the first edition to illustrate recent applications. Questions are included in this new edition. No prior knowledge of computer simulation is assumed.
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LibraryThing ReviewUser Review - yapete - LibraryThing
Probably the best book on Molecular computer simulations. Gives the how to and the physical reasoning behind it. If you are a grad student or researcher trying to get into this stuff, this is a great book to start with. Read full review
Review: Understanding Molecular Simulation: From Algorithms to ApplicationsUser Review - Cameozl - Goodreads
CH4 Read full review
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Frenkel, Smit. Understanding molecular simulation (AP, 2002 ...
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Understanding molecular simulation: From algorithms to ...
Understanding molecular simulation: From algorithms to applications, by Daan Frenkel and Berend Smit. Authors: Ratner, Mark A. Publication: ...
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NSDL Materials Digital Library Soft Matter Wiki - Home
Title: Understanding molecular simulation : from algorithms to applications. Author(s): Daan Frenkel, Berend Smit. Edition: 2nd ...
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Understanding Molecular Simulations
Computational Physics and Chemistry. Case Studies to accompany 'Understanding Molecular Simulations: From Algorithms to Applications' by Daan Frenkel and ...
molsim.chem.uva.nl/ frenkel_smit/ README.html
Understanding Molecular Simulation
Understanding Molecular Simulation: From Algorithms to Applications, 1st edition. Understanding Molecular Simulation ...
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Understanding Molecular Simulation: From Algorithms to Applications explains the physics behind the recipes of molecular simulation for materials science. ...
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Self-consistent dissipative particle dynamics algorithm
References. 1: LADD ajc, J. Fluid Mech., 271 1994 285. 2: FRISCH U., HASSLACHER B. AND POMEAU Y., Phys. Rev. Lett., 56 1986 1505. ...
www.iop.org/ EJ/ article/ 0295-5075/ 42/ 4/ 377/ node1.html
SIMU: Conferences, Workshops, Mini-workshops, Schools and Tutorials
2003 SIMU Activities. Workshops. Mesoscopic modelling of polymer Dynamics , February 3-5 organized by jp Wittmer, Marcus Müller and Patrick B. Warren. ...
simu.ulb.ac.be/ activities/ activities.html
References Atomic Scale Simulation
General Books. *D. Frenkel and B. Smit, “Understanding Molecular Simulation,” second edition, Academic Press, 2002. CLASS TEXTBOOK ...
ib.cnea.gov.ar/ ~fiscom/ links/ ceperley_books.html