Advances in Biophysical Chemistry, Volume 5
Advances in Biophysical Chemistry, Volume 5, provides reviews of important topics in physical and structural biochemistry. The volume begins with a review of the chemical reactivity of DNA and its relationship to the dynamic nature of DNA conformation and its dependence on base sequence. The underlying chemistry has become extremely important to many researchers who use a host of chemical "footprinting" techniques to study biologically relevant complexes of DNA. This is followed by separate chapters that cover an innovative application of fluorescence energy transfer to investigate the dynamics of complex glycopeptides; the NMR of cations which bind to DNA, providing a picture of DNA conformation and dynamics which is complementary to that provided by 1H NMR spectroscopy; the use of NMR to study electron transfer reactions between cytochrome c peroxidase and cytochrome c; methods for analysis of data on O2 binding by hemoglobin; and experimental methods for obtaining data on protein association.
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CHCHAPTER 2 DECIPHERING OLIGOSACCHARIDE FLEXIBILITY USING FLUORESCENCE ENERGY TRANSFER
CHCHAPTER 3 NMR STUDIES OF CATIONBINDING ENVIRONMENTS ON NUCLEIC ACIDS
NEW INSIGHTS INTO ELECTRON TRANSFER COMPLEX FORMATION AND THE CATALYTIC MECHANISM FROM DYNAMIC NMR STU...
CHCHAPTER 5 STATISTICAL THERMODYNAMIC MODELING OF HEMOGLOBIN COOPERATIVITY
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Ackers actinomycin Adair constants analysis analyzed association base pair binding constant Biochem Biochemistry Biol Biophys Biopolymers bound Braunlin calculated cations Chem chemical shift chromatography column complex concentration conformation constraints cooperativity correlation cytochrome dansyl dependence determined dimers dissociation distance DNA sequences DNAse duplex duplex DNA effects elution enzyme equation equilibrium constant Erman estimated evaluated exchange experiments flanking sequences fluorescence fluorophore footprinting fractional saturation free energy free energy change function glycopeptide heme hemoglobin interactions ionic strength iso-1 ferricytochrome isomer kcal/mol kinetic large zone least-squares ligand ligand binding linear linkage Lorentzian measurements method molecular molecules multivalent cations MWC model Nucleic Acids Res observed obtained oligomers oligosaccharide oxidation oxygen binding parameters plots protein proton quadrupolar quaternary structure rate constant relaxation rates repressor sequence-dependent shown in Figure solution specific statistical thermodynamic strand cleavage studies subunits Table techniques temperature tetramer triantennary glycopeptide values yeast iso-1