Genome Informatics 2010: The 10th Annual International Workshop on Bioinformatics and Systems Biology (IBSB 2010) : Kyoto University, Japan, 26-28 July 2010
This volume contains 18 peer-reviewed papers based on the presentations at the 10th Annual International Workshop on Bioinformatics and Systems Biology (IBSB 2010) held at Kyoto University from July 26 to July 28, 2010. This workshop started in 2001 as an event for doctoral students and young researchers to present and discuss their research results and approaches in bioinformatics and systems biology. It is part of a collaborative educational program involving leading institutions and leaders committed to the following programs: bull; Boston - Graduate Program in Bioinformatics, Boston University bull; Berlin - The International Research Training Group (IRTG) "Genomics and Systems Biology of Molecular Networks" bull; Kyoto - The JSPS International Training Program (ITP) "International Research and Training Program of Bioinformatics and Systems Biology" bull; Tokyo - Global COE Program "Center of Education and Research for Advanced Genome-Based Medicine"
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KINETIC MODELLING OF DNA REPLICATION INITIATION IN BUDDING YEAST
PREDICTING PROTEIN COMPLEX GEOMETRIES WITH LINEAR SCORING FUNCTIONS
CHARACTERIZING COMMON SUBSTRUCTURES OF LIGANDS FOR GPCR PROTEIN SUBFAMILIES
MODELLING OF AQUAPORIN2 TRAFFICKING
COMPARISON OF GENE EXPRESSION PROFILES PRODUCED BY CAGE ILLUMINA MICROARRAY AND REAL TIME RTPCR
ON THE PERFORMANCE OF METHODS FOR FINDING A SWITCHING MECHANISM IN GENE EXPRESSION
GENE REGULATORY NETWORK CLUSTERING FOR GRAPH LAYOUT BASED ON MICROARRAY GENE EXPRESSION DATA
FLUXVIZ CYTOSCAPE PLUGIN FOR VISUALIZATION OF FLUX DISTRIBUTIONS IN NETWORKS
GENOMEWIDE ANALYSIS OF PLANT UGT FAMILY BASED ON SEQUENCE AND SUBSTRATE INFORMATION
ROBUST GENE NETWORK ANALYSIS REVEALS ALTERATION OF THE STAT5a NETWORK AS A HALLMARK OF PROSTATE CANCER
ANALYZING GENE COEXPRESSION DATA BY AN EVOLUTIONARY MODEL
COLLOCATIONBASED SPARSE ESTIMATION FOR CONSTRUCTING DYNAMIC GENE NETWORKS
DIFFERENT GROUPS OF METABOLIC GENES CLUSTER AROUND EARLY AND LATE FIRING ORIGINS OF REPLICATION IN BUDDING ...
INTEGER PROGRAMMINGBASED METHOD FOR COMPLETING SIGNALING PATHWAYS AND ITS APPLICATION TO ANALYSIS OF COL...
G1 AND G2 ARRESTS IN RESPONSE TO OSMOTIC SHOCK ARE ROBUST PROPERTIES OF THE BUDDING YEAST CELL CYCLE
A DYNAMIC PROGRAMMING ALGORITHM TO PREDICT SYNTHESIS PROCESSES OF TREESTRUCTURED COMPOUNDS WITH GRAPH G...
activation algorithm analysis AQP2 attractor Bioinformatics Biol biological biosynthesis budding yeast CAGE tags catabolic Cdc6 Cdtl cell cycle Chem chemical Clb5 cluster coexpression colorectal cancer common substructures compounds computational correlation cyclin database dataset dDAVP decoys deﬁned disease DNA replication DNA replication initiation dynamic ECRGT enzymes eukaryotic experimental ﬁnd ﬁring ﬁrst ﬂavonoid FluxViz FTGI gene expression gene expression data gene expression proﬁles gene networks gene regulatory networks Genome Genome Informatics glycosyltransferases GO terms GPCR grade tumors graph hubs identiﬁed illumina microarray KEGG kinase ligands linear scoring function lipid mediator metabolic process method microarray microarray data neural network node normal number of genes ortholog osmotic stress p-value pheromone phosphorylation phylogenetic pre-RC prediction prostate cancer protein complexes qRT-PCR ranked reactions regulation replication origins replisome represented sequence signaling pathways signiﬁcant simulation speciﬁcity STAT5a structure Systems Biology Table target transcription factor tree UGTs values vector visualization ZDOCK