Genome Informatics 2010: The 10th Annual International Workshop on Bioinformatics and Systems Biology (IBSB 2010) : Kyoto University, Japan, 26-28 July 2010

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World Scientific, 2010 - Mathematics - 232 pages
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This volume contains 18 peer-reviewed papers based on the presentations at the 10th Annual International Workshop on Bioinformatics and Systems Biology (IBSB 2010) held at Kyoto University from July 26 to July 28, 2010. This workshop started in 2001 as an event for doctoral students and young researchers to present and discuss their research results and approaches in bioinformatics and systems biology. It is part of a collaborative educational program involving leading institutions and leaders committed to the following programs: bull; Boston - Graduate Program in Bioinformatics, Boston University bull; Berlin - The International Research Training Group (IRTG) "Genomics and Systems Biology of Molecular Networks" bull; Kyoto - The JSPS International Training Program (ITP) "International Research and Training Program of Bioinformatics and Systems Biology" bull; Tokyo - Global COE Program "Center of Education and Research for Advanced Genome-Based Medicine"
 

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Contents

KINETIC MODELLING OF DNA REPLICATION INITIATION IN BUDDING YEAST
1
PREDICTING PROTEIN COMPLEX GEOMETRIES WITH LINEAR SCORING FUNCTIONS
21
CHARACTERIZING COMMON SUBSTRUCTURES OF LIGANDS FOR GPCR PROTEIN SUBFAMILIES
31
MODELLING OF AQUAPORIN2 TRAFFICKING
42
COMPARISON OF GENE EXPRESSION PROFILES PRODUCED BY CAGE ILLUMINA MICROARRAY AND REAL TIME RTPCR
56
ON THE PERFORMANCE OF METHODS FOR FINDING A SWITCHING MECHANISM IN GENE EXPRESSION
69
GENE REGULATORY NETWORK CLUSTERING FOR GRAPH LAYOUT BASED ON MICROARRAY GENE EXPRESSION DATA
84
FLUXVIZ CYTOSCAPE PLUGIN FOR VISUALIZATION OF FLUX DISTRIBUTIONS IN NETWORKS
96
GENOMEWIDE ANALYSIS OF PLANT UGT FAMILY BASED ON SEQUENCE AND SUBSTRATE INFORMATION
127
ROBUST GENE NETWORK ANALYSIS REVEALS ALTERATION OF THE STAT5a NETWORK AS A HALLMARK OF PROSTATE CANCER
139
ANALYZING GENE COEXPRESSION DATA BY AN EVOLUTIONARY MODEL
154
COLLOCATIONBASED SPARSE ESTIMATION FOR CONSTRUCTING DYNAMIC GENE NETWORKS
164
DIFFERENT GROUPS OF METABOLIC GENES CLUSTER AROUND EARLY AND LATE FIRING ORIGINS OF REPLICATION IN BUDDING ...
179
INTEGER PROGRAMMINGBASED METHOD FOR COMPLETING SIGNALING PATHWAYS AND ITS APPLICATION TO ANALYSIS OF COL...
193
G1 AND G2 ARRESTS IN RESPONSE TO OSMOTIC SHOCK ARE ROBUST PROPERTIES OF THE BUDDING YEAST CELL CYCLE
204
A DYNAMIC PROGRAMMING ALGORITHM TO PREDICT SYNTHESIS PROCESSES OF TREESTRUCTURED COMPOUNDS WITH GRAPH G...
218

COMPREHENSIVE GENOMIC ANALYSIS OF SULFURRELAY PATHWAY GENES
104
PHYLOGENETIC ANALYSIS OF LIPID MEDIATOR GPCRs
116

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