## High Performance Computing for Computational Science - VECPAR 2002: 5th International Conference, Porto, Portugal, June 26-28, 2002. Selected Papers and Invited Talks, Volume 5The 5th edition of the VECPAR series of conferences marked a change of the conference title. The full conference title now reads VECPAR 2002 — 5th Int- national Conference on High Performance Computing for Computational S- ence. This re?ects more accurately what has been the main emphasis of the conference since its early days in 1993 – the use of computers for solving pr- lems in science and engineering. The present postconference book includes the best papers and invited talks presented during the three days of the conference, held at the Faculty of Engineering of the University of Porto (Portugal), June 26–28 2002. The book is organized into 8 chapters, which as a whole appeal to a wide research community, from those involved in the engineering applications to those interested in the actual details of the hardware or software implementation, in line with what, in these days, tends to be considered as Computational Science and Engineering (CSE). The book comprises a total of 49 papers, with a prominent position reserved for the four invited talks and the two ?rst prizes of the best student paper competition. |

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### Contents

FluidStructure Interaction Simulations Using Parallel Computers Invited Talk | 3 |

First Prize | 24 |

A Parallel StateoftheArt LeastSquares Spectral Element Solver for Incompressible Flow Problems | 39 |

EdgeBased Interface Elements for Solution of ThreeDimensional Geomechanical Problems | 53 |

Development and Assessment of Performance in a Cluster of PCs with Software DSM | 65 |

Parallel Implementation for Probabilistic Analysis of 3D Discrete Cracking in Concrete | 79 |

An A Posteriori Error Estimator for Adaptive Mesh Refinement Using Parallel InElement Particle Tracking Methods | 94 |

High Performance Data Mining | 108 |

Mapping Unstructured Applications into Nested Parallelism | 407 |

An Efficient Parallel and Distributed Algorithm for Counting Frequent Sets | 421 |

A Framework for Integrating Network Information into Distributed Iterative Solution of Sparse Linear Systems | 436 |

Efficient Hardware Implementation of Modular Multiplication and Exponentiation for PublicKey Cryptography | 448 |

RealTime Visualization of WakeVortex Simulations Using Computational Steering and Beowulf Clusters | 464 |

A Dynamic Parallel Coupler | 479 |

A Null Message Count of a Conservative Parallel Simulation | 493 |

Static Scheduling with Interruption Costs for Computer Vision Applications | 507 |

Data Mining for Data Classification Based on the KNNFuzzy Method Supported by Genetic Algorithm | 126 |

Lignin Biosynthesis and Degradation a Major Challenge for Computational Chemistry | 137 |

High Performance Computing in Electron Microscope Tomography of Complex Biological Structures | 166 |

Visualization of RNA Pseudoknot Structures | 181 |

Design and Applications | 197 |

Performance of MessagePassing MATLAB Toolboxes | 228 |

Evaluating the Performance of Space Plasma Simulations Using FPGAs | 242 |

Remote Parallel Model Reduction of Linear TimeInvariant Systems Made Easy | 255 |

An Approach to Teaching Computer Arithmetic | 269 |

Fast Sparse MatrixVector Multiplication for TeraFlops Computers | 287 |

Performance Evaluation of Parallel GramSchmidt Reorthogonalization Methods | 302 |

Toward MemoryEfficient Linear Solvers | 315 |

A Parallel NewtonGMRES Algorithm for Solving Large Scale Nonlinear Systems | 328 |

Preconditioning for an Iterative Elliptic Solver on a Vector Processor | 343 |

A Large Scale Electron Scattering Simulation Dominated by the Multiplication of Dynamically Changing Matrices | 354 |

A Parallel Implementation of the Atkinson Algorithm for Solving a Fredholm Equation | 368 |

Scalable Library for Eigenvalue Problem Computations | 377 |

Parallelization of Spectral Element Methods | 392 |

A Parallel Rendering Algorithm Based on Hierarchical Radiosity | 523 |

A HighPerformance Progressive Radiosity Method Based on Scene Partitioning | 537 |

Wavelet Transform for Large Scale Image Processing on Modern Microprocessors | 549 |

An Expandable Parallel File System Using NFS Servers | 563 |

Scalable Multithreading in a Low Latency Myrinet Cluster | 579 |

Minimizing Paging Tradeoffs Applying Coscheduling Techniques in a Linux Cluster | 593 |

Introducing the Vector C | 608 |

Mobile Agent Programming for Clusters with Parallel Skeletons | 622 |

Translating Haskell Programs into Petri Nets | 635 |

An Efficient Multiprocessor Architecture for Parallel Cyclic Reference Counting | 650 |

The RollbackOneStep Method to Minimize the Waiting Time during | 664 |

Distributed Paged Hash Tables | 679 |

A Metaheuristic Approach to Parallel Code Generation | 693 |

Semidefinite Programming for Graph Partitioning with Preferences in Data Distribution | 703 |

A Development Environment for Multilayer Neural Network Applications Mapped onto DSPs with Multiprocessing Capabilities | 717 |

Author Index | 731 |

### Other editions - View all

High Performance Computing for Computational Science - Vecpar 2002 José M. L. M. Palma,Jack Dongarra,Vicente Hernandez No preview available - 2014 |

### Common terms and phrases

analysis application approach architecture array Berlin Heidelberg 2003 block cache Cactus checkpoint client cluster communication Computer Science coniferyl alcohol data mining data structures dataset developed discrete distributed dynamic edges efficient eigenvalue EIT update environment equations error execution Figure finite floating point function global GMRES graph grid hardware hash IEEE implementation input interface elements iteration J.M.L.M. Palma lignin linear system Linux LNCS loop Matlab matrix matrix-vector memory mesh message passing method MG-S modular monolignols multiplication Myrinet nodes null message number of processors obtained operations optimal page fault parallel algorithm Parallel Computing parameters partitioning patch performance Petri nets petsc problem Proc programming pseudoknot R-matrix radiosity reduced reference counting routines scalability scheduling semidefinite programming server shows simulation solution solve solver sparse spectral element speedup subspace synchronization Table task techniques thorns threads tion VECPAR vector