## Mathematical Approaches to Polymer Sequence Analysis and Related ProblemsAn edited volume describing the latest developments in approaching the problem of polymer sequence analysis, with special emphasis on the most relevant biopolymers (peptides and DNA) but not limited to them. The chapters will include peptide sequence analysis, DNA sequence analysis, analysis of biopolymers and nonpolymers, sequence alignment problems, and more. |

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### Contents

1 | |

Chapter 2 Divide and Conquer Strategies for Protein Structure Prediction
| 23 |

Chapter 3 Secondary Structure Classification of Isoform Protein Markers in Oncology
| 47 |

Chapter 4 Protein Fold Recognition Using Markov Logic Networks
| 69 |

Chapter 5 Mining Spatial Association Rules for Composite Motif Discovery
| 86 |

Chapter 6 Modeling Biochemical Pathways
| 111 |

Chapter 7 Haplotype Inference Using Propositional Satisfiability
| 127 |

Chapter 8 Estimating Phylogenies from Molecular Data
| 148 |

Chapter 9 Population Stratification Analysis in GenomeWide Association Studies
| 177 |

Chapter 10 Predicting and Measuring the Sequence Distribution of Addition Polymers
| 197 |

Chapter 11 Predicting and Measuring the Sequence Distribution of Condensation Polymers
| 227 |

247 | |

### Other editions - View all

Mathematical Approaches to Polymer Sequence Analysis and Related Problems Renato Bruni No preview available - 2010 |

Mathematical Approaches to Polymer Sequence Analysis and Related Problems Renato Bruni No preview available - 2014 |

### Common terms and phrases

algorithm alignment allele amino acids approach atoms atomsets barycenter Bioinformatics Biology chain Chem chi-squared classification clauses components computational considered copolymer copolymerization corresponding database dataset defined denotes described edge weights EIGENSTRAT evolutionary formula fragments function genetic genome genotype given haplotype inference HIPP input isoforms Iterated likelihood linear M.S. Montaudo machine learning Macromolecules Markov Logic Networks mass mathematical matrix methods minimum evolution module molar molecular molecules monomer mutations nonlinear complementarity problem nucleotide obtained oligomers optimization P-matrix parameters patterns peaks peptide performed phylogenetic estimation phylogeny PLINK Polymer Sequence polymerization population position possible problem proposed protein secondary structure protein structure reaction repeat units residues secondary structure prediction Sequence Analysis sequence distribution single motifs SMLNs SNPs solution solver spatial association rules specific spectrum Springer Science+Business Media statistics stochastic tabu search taxa training set values variables vector