Pacific Symposium on Biocomputing 2007: Maui, Hawaii, 3-7 January 2007

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World Scientific, 2007 - Biology - 507 pages
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The Pacific Symposium on Biocomputing (PSB) 2007 is an international, multidisciplinary conference for the presentation and discussion of current research in the theory and application of computational methods in problems of biological significance. Presentations are rigorously peer reviewed and are published in an archival proceedings volume. PSB 2007 will be held January 3OCo7, 2007 at the Grand Wailea, Maui. Tutorials will be offered prior to the start of the conference. PSB 2007 will bring together top researchers from the US, the Asian Pacific nations, and around the world to exchange research results and address open issues in all aspects of computational biology. It is a forum for the presentation of work in databases, algorithms, interfaces, visualization, modeling, and other computational methods, as applied to biological problems, with emphasis on applications in data-rich areas of molecular biology. The PSB has been designed to be responsive to the need for critical mass in sub-disciplines within biocomputing. For that reason, it is the only meeting whose sessions are defined dynamically each year in response to specific proposals. PSB sessions are organized by leaders of research in biocomputing''s OC hot topics.OCO In this way, the meeting provides an early forum for serious examination of emerging methods and approaches in this rapidly changing field. Sample Chapter(s). Chapter 1: Protein Interactions and Disease (106 KB). Contents: Protein Interactions and Disease; Computational Approaches to Metabolomics; New Frontiers in Biomedical Text Mining; Biodiversity Informatics: Managing Knowledge Beyond Humans and Model Organisms; Computational Proteomics: High-Throughput Analysis for Systems Biology; DNA-Protein Interactions: Integrating Structure, Sequence, and Function. Readership: Academia and industry in the fields of biocomputing, bioinformatics and computational biology."
 

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Contents

Preface v
1
OntologyBased Pathway Modeling and Qualitative
16
Predicting Structure and Dynamics of LooselyOrdered Protein
40
Prediction of LigandReceptor Interactions Using
64
An Iterative Algorithm for Metabolic NetworkBased Drug
88
Transcriptional Interactions During Smallpox Infection and
100
COMPUTATIONAL APPROACHES TO METABOLOMICS
112
A Prelude to Metabolic Profiling
127
NEW FRONTIERS IN BIOMEDICAL TEXT MINING
205
Annotating Genes Using Textual Patterns
221
Integrating Natural Language Processing with Flybase Curation
245
GeneRIF Quality Assurance as Summary Revision
269
Evaluating the Automatic Mapping of Human Gene and Protein
281
Mining Patents Using Molecular Similarity Search
304
A Cognitive Evaluation of Four Online Search Engines for
328
Biomediator Data Integration and Inference for Functional
343

Comparative QSAR Analysis of Bacterial Fungal Plant and
133
A Web Server for Automating Metabolome Annotations
145
New Bioinformatics Resources for Metabolomics
157
A Public Study Design Database for Metabolomic Projects
169
Comparative Metabolomics of Breast Cancer
181
An Anatomical Ontology for Amphibians
367
Markup of Biosystematic Legacy Literature
391
Advancement in Protein Inference from Shotgun Proteomics
409
Assessing and Combining Reliability of Protein Interaction Sources
433
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Page 420 - A. (2004) The need for guidelines in publication of peptide and protein identification data: working group on publication guidelines for peptide and protein identification data. Mol. Cell. Proteomics 3, 531-533.

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