## Quantum Bio-Informatics III: From Quantum Information to Bio-Informatics, Tokyo University of Science, Japan, 11-14 March 2009The purpose of this proceedings volume is to look for interdisciplinary bridges in mathematics, physics, information and life sciences, in particular, research for new paradigms for information and life sciences on the basis of quantum theory. The main areas in this volume are all related to one of the following subjects: quantum information, bio-informatics and the interrelation between (1) and (2). |

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### Contents

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Spectral Properties of Entanglement Witnesses and Positive Maps D Chrusciriski | 49 |

Quantum Entanglement and Multipartite Symmetric States D Chrusciriski | 59 |

On a Quantum Model of Brain Activities KH Fichtner L Fichtner W Freudenberg and M Ohya | 81 |

Some of the Recent Topics in White Noise Theory T Hida | 93 |

Quantum Dynamics of Superconducting Qubit Readout with a Driven Nonlinear Josephson Oscillator H Nakano | 265 |

Roles of Asymptotic Condition and SMatrix as MicroMacro Duality in QFT 1 Ojima | 277 |

Gaussian Markov Triplets D Petz and J Pitrik | 291 |

Theory and Experiments M Regoli | 305 |

Duality Arising from Multiple Markov Gaussian Processes Si Si and W W Htay | 317 |

Novel Computational Approaches to Drug Discovery J Skolnick and M Brylinski | 327 |

Feynman Type Formulae for Quantum Evolution and Diffusion on Manifolds and Graphs O G Smolyanov | 337 |

Poisson Noise and the Dynamics of Infinite Particle Systems L Streit | 349 |

Note on Generalized White Noise Functionals T Hida | 101 |

On Estimation of the Position Distribution of the Ideal Bose Gas KH Fichtner K Inoue and M Ohya | 111 |

On Generalization of Quantum Mutual Entropy by Using Liftings S lriyama and M Ohya | 127 |

A New Approach to Stroboscopic Tomography of Open Systems A Jamiolkowski | 137 |

An Introduction to Frames and Their Applications to Quantum Optics A Jamiolkowski | 147 |

Memory in a Nonlocally Damped Oscillator D Chruscinski and J Jurkowski | 155 |

An Introduction to Quantization of Dissipative Systems The Damped Harmonic Oscillator Case J Jurkowski | 167 |

Classical and Quantum Probability for Biologists Introduction A Khrennikov | 179 |

2Adic Degeneration of the Genetic Code and Energy of Binding of Codons A Yu Khrennikov and S V Kozyrev | 193 |

On Positive Maps PPT States and Entanglement WA Majewski | 205 |

Detecting Entanglement in Spin Lattice Models M Michalski | 217 |

How to Detect Entanglement in Quantum Systems M Michalskii | 231 |

Tunneling Study on HighTc Superconductors M Minematsu S Kawashima and N Miyakawa | 251 |

ReplicaExchange Molecular Dynamics Simulations of Amyloid Precursor Protein Dimer in Membrane N Miyashita and Y Sugita | 361 |

Comparison of Square Contingency Tables Using Measure of Departure from Marginal Homogeneity K Tahata K Yamamoto N Miyamoto and S To... | 369 |

On the Statics for MicroArray Data Analysis T Urushibara S Akasaka M Ito T Suzuki and S Miyazaki | 381 |

Functional Mechanics and Time Irreversibility Problem I V Volovich | 393 |

Inferring Functional Relationships through Coexpression D Wanke A Hahn J Kilian K Harter and K W Berendzen | 405 |

On Entropies of Quantum Dynamical Systems N Watanabe | 425 |

Significant Improvement of Sequence Alignment can be Done by Considering Transition Probability between Two Consecutive Pairs of Residues T ... | 443 |

A Computational Approach to Explore Protein Translocation through Type III Secretion Apparatus T Rathinavelan and W Im | 453 |

Carbon Nanotubes for Building Blocks of Quantum Computing Devices K Ishibashi S Moriyama T Fuse Y Kawano and T Yamaguchi | 465 |

In Silico Analysis for the Study of Botulinum Toxin Structure T Suzuki and S Miyazaki | 481 |

Gene Discovery Methods from Largescale Gene Expression Data A Shimizu and K Yano | 489 |

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