Thermodynamic Network Analysis of Biological Systems |
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1-junctions 2-port elements action potentials active centers active transport Al-elements ansatz assumed asymptotically stable autocatalytic bath system behaviour biological membranes biological systems bond-graph network C₁ capacitance matrix Chapter chemical potential chemical reactions closed loops concentration condition defined derive diffusion dL/dt entropy production enzyme equations of motion expressed external feedback formulation function given globally and asymptotically Hodgkin-Huxley Hodgkin-Huxley model inserting instable intensive variables interaction internal energy ions irreversible Ising model J₁ J₂ k₁ k₂ limit cycle linear macro-states membrane voltage molecular molecules network language nonequilibrium obtain particles phase space phenomenon physical pore model ports processes product ansatz R₁ R₂ rate constants reaction flux real system relation relaxation reverse rates Section 2.2 so-called solution stability stable steady steady state flux substrate subsystems temperature thermodynamic equilibrium thermodynamic system variables variations Volterra-Lotka whereas X₁ X₂ α α αβ